tf.data: Build TensorFlow input pipelines

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The tf.data API enables you to build complex input pipelines from simple, reusable pieces. For example, the pipeline for an image model might aggregate data from files in a distributed file system, apply random perturbations to each image, and merge randomly selected images into a batch for training. The pipeline for a text model might involve extracting symbols from raw text data, converting them to embedding identifiers with a lookup table, and batching together sequences of different lengths. The tf.data API makes it possible to handle large amounts of data, read from different data formats, and perform complex transformations.

The tf.data API introduces a tf.data.Dataset abstraction that represents a sequence of elements, in which each element consists of one or more components. For example, in an image pipeline, an element might be a single training example, with a pair of tensor components representing the image and its label.

There are two distinct ways to create a dataset:

  • A data source constructs a Dataset from data stored in memory or in one or more files.

  • A data transformation constructs a dataset from one or more tf.data.Dataset objects.

from __future__ import absolute_import, division, print_function, unicode_literals
try:
  !pip install -q tf-nightly
except Exception:
  pass
import tensorflow as tf
ERROR: tensorflow 2.1.0 has requirement gast==0.2.2, but you'll have gast 0.3.3 which is incompatible.
import pathlib
import matplotlib.pyplot as plt
import pandas as pd
import numpy as np

np.set_printoptions(precision=4)

Basic mechanics

To create an input pipeline, you must start with a data source. For example, to construct a Dataset from data in memory, you can use tf.data.Dataset.from_tensors() or tf.data.Dataset.from_tensor_slices(). Alternatively, if your input data is stored in a file in the recommended TFRecord format, you can use tf.data.TFRecordDataset().

Once you have a Dataset object, you can transform it into a new Dataset by chaining method calls on the tf.data.Dataset object. For example, you can apply per-element transformations such as Dataset.map(), and multi-element transformations such as Dataset.batch(). See the documentation for tf.data.Dataset for a complete list of transformations.

The Dataset object is a Python iterable. This makes it possible to consume its elements using a for loop:

dataset = tf.data.Dataset.from_tensor_slices([8, 3, 0, 8, 2, 1])
dataset
<TensorSliceDataset shapes: (), types: tf.int32>
for elem in dataset:
  print(elem.numpy())
8
3
0
8
2
1

Or by explicitly creating a Python iterator using iter and consuming its elements using next:

it = iter(dataset)

print(next(it).numpy())
8

Alternatively, dataset elements can be consumed using the reduce transformation, which reduces all elements to produce a single result. The following example illustrates how to use the reduce transformation to compute the sum of a dataset of integers.

print(dataset.reduce(0, lambda state, value: state + value).numpy())
22

Dataset structure

A dataset contains elements that each have the same (nested) structure and the individual components of the structure can be of any type representable by tf.TypeSpec, including Tensor, SparseTensor, RaggedTensor, TensorArray, or Dataset.

The Dataset.element_spec property allows you to inspect the type of each element component. The property returns a nested structure of tf.TypeSpec objects, matching the structure of the element, which may be a single component, a tuple of components, or a nested tuple of components. For example:

dataset1 = tf.data.Dataset.from_tensor_slices(tf.random.uniform([4, 10]))

dataset1.element_spec
TensorSpec(shape=(10,), dtype=tf.float32, name=None)
dataset2 = tf.data.Dataset.from_tensor_slices(
   (tf.random.uniform([4]),
    tf.random.uniform([4, 100], maxval=100, dtype=tf.int32)))

dataset2.element_spec
(TensorSpec(shape=(), dtype=tf.float32, name=None),
 TensorSpec(shape=(100,), dtype=tf.int32, name=None))
dataset3 = tf.data.Dataset.zip((dataset1, dataset2))

dataset3.element_spec
(TensorSpec(shape=(10,), dtype=tf.float32, name=None),
 (TensorSpec(shape=(), dtype=tf.float32, name=None),
  TensorSpec(shape=(100,), dtype=tf.int32, name=None)))
# Dataset containing a sparse tensor.
dataset4 = tf.data.Dataset.from_tensors(tf.SparseTensor(indices=[[0, 0], [1, 2]], values=[1, 2], dense_shape=[3, 4]))

dataset4.element_spec
SparseTensorSpec(TensorShape([3, 4]), tf.int32)
# Use value_type to see the type of value represented by the element spec
dataset4.element_spec.value_type
tensorflow.python.framework.sparse_tensor.SparseTensor

The Dataset transformations support datasets of any structure. When using the Dataset.map(), and Dataset.filter() transformations, which apply a function to each element, the element structure determines the arguments of the function:

dataset1 = tf.data.Dataset.from_tensor_slices(
    tf.random.uniform([4, 10], minval=1, maxval=10, dtype=tf.int32))

dataset1
<TensorSliceDataset shapes: (10,), types: tf.int32>
for z in dataset1:
  print(z.numpy())
[7 7 4 7 9 9 1 5 2 8]
[7 3 4 6 5 3 8 3 2 5]
[6 2 6 9 5 6 4 1 9 8]
[3 6 3 3 7 6 2 4 9 5]
dataset2 = tf.data.Dataset.from_tensor_slices(
   (tf.random.uniform([4]),
    tf.random.uniform([4, 100], maxval=100, dtype=tf.int32)))

dataset2
<TensorSliceDataset shapes: ((), (100,)), types: (tf.float32, tf.int32)>
dataset3 = tf.data.Dataset.zip((dataset1, dataset2))

dataset3
<ZipDataset shapes: ((10,), ((), (100,))), types: (tf.int32, (tf.float32, tf.int32))>
for a, (b,c) in dataset3:
  print('shapes: {a.shape}, {b.shape}, {c.shape}'.format(a=a, b=b, c=c))
shapes: (10,), (), (100,)
shapes: (10,), (), (100,)
shapes: (10,), (), (100,)
shapes: (10,), (), (100,)

Reading input data

Consuming NumPy arrays

See Loading NumPy arrays for more examples.

If all of your input data fits in memory, the simplest way to create a Dataset from them is to convert them to tf.Tensor objects and use Dataset.from_tensor_slices().

train, test = tf.keras.datasets.fashion_mnist.load_data()
Downloading data from https://storage.googleapis.com/tensorflow/tf-keras-datasets/train-labels-idx1-ubyte.gz
32768/29515 [=================================] - 0s 0us/step
Downloading data from https://storage.googleapis.com/tensorflow/tf-keras-datasets/train-images-idx3-ubyte.gz
26427392/26421880 [==============================] - 0s 0us/step
Downloading data from https://storage.googleapis.com/tensorflow/tf-keras-datasets/t10k-labels-idx1-ubyte.gz
8192/5148 [===============================================] - 0s 0us/step
Downloading data from https://storage.googleapis.com/tensorflow/tf-keras-datasets/t10k-images-idx3-ubyte.gz
4423680/4422102 [==============================] - 0s 0us/step
images, labels = train
images = images/255

dataset = tf.data.Dataset.from_tensor_slices((images, labels))
dataset
<TensorSliceDataset shapes: ((28, 28), ()), types: (tf.float64, tf.uint8)>

Consuming Python generators

Another common data source that can easily be ingested as a tf.data.Dataset is the python generator.

def count(stop):
  i = 0
  while i<stop:
    yield i
    i += 1
for n in count(5):
  print(n)
0
1
2
3
4

The Dataset.from_generator constructor converts the python generator to a fully functional tf.data.Dataset.

The constructor takes a callable as input, not an iterator. This allows it to restart the generator when it reaches the end. It takes an optional args argument, which is passed as the callable's arguments.

The output_types argument is required because tf.data builds a tf.Graph internally, and graph edges require a tf.dtype.

ds_counter = tf.data.Dataset.from_generator(count, args=[25], output_types=tf.int32, output_shapes = (), )
for count_batch in ds_counter.repeat().batch(10).take(10):
  print(count_batch.numpy())
[0 1 2 3 4 5 6 7 8 9]
[10 11 12 13 14 15 16 17 18 19]
[20 21 22 23 24  0  1  2  3  4]
[ 5  6  7  8  9 10 11 12 13 14]
[15 16 17 18 19 20 21 22 23 24]
[0 1 2 3 4 5 6 7 8 9]
[10 11 12 13 14 15 16 17 18 19]
[20 21 22 23 24  0  1  2  3  4]
[ 5  6  7  8  9 10 11 12 13 14]
[15 16 17 18 19 20 21 22 23 24]

The output_shapes argument is not required but is highly recomended as many tensorflow operations do not support tensors with unknown rank. If the length of a particular axis is unknown or variable, set it as None in the output_shapes.

It's also important to note that the output_shapes and output_types follow the same nesting rules as other dataset methods.

Here is an example generator that demonstrates both aspects, it returns tuples of arrays, where the second array is a vector with unknown length.

def gen_series():
  i = 0
  while True:
    size = np.random.randint(0, 10)
    yield i, np.random.normal(size=(size,))
    i += 1
for i, series in gen_series():
  print(i, ":", str(series))
  if i > 5:
    break
0 : [ 0.9475 -0.6361  0.9765]
1 : [-0.555   1.3723  0.1027 -1.0957  0.141 ]
2 : [-0.5906 -1.2747  0.5064  1.104   0.1396 -0.1937 -0.3695 -0.5508]
3 : [ 0.2029  0.7422  1.3038  1.0698  1.7587 -0.7051]
4 : [ 0.4777  0.568  -0.7713 -0.0322 -1.0875]
5 : [ 0.2634 -0.3093  0.6087]
6 : [-0.1843  0.6568  0.2268  2.1317 -0.2758 -0.4531]

The first output is an int32 the second is a float32.

The first item is a scalar, shape (), and the second is a vector of unknown length, shape (None,)

ds_series = tf.data.Dataset.from_generator(
    gen_series, 
    output_types=(tf.int32, tf.float32), 
    output_shapes=((), (None,)))

ds_series
<FlatMapDataset shapes: ((), (None,)), types: (tf.int32, tf.float32)>

Now it can be used like a regular tf.data.Dataset. Note that when batching a dataset with a variable shape, you need to use Dataset.padded_batch.

ds_series_batch = ds_series.shuffle(20).padded_batch(10)

ids, sequence_batch = next(iter(ds_series_batch))
print(ids.numpy())
print()
print(sequence_batch.numpy())
[10  2 13  4 19 12 25 14  8  0]

[[ 0.6505  0.9339 -0.6796  0.      0.      0.      0.      0.    ]
 [ 1.4865 -0.5334  0.      0.      0.      0.      0.      0.    ]
 [ 0.9648  1.0677 -1.2092 -0.4564  0.9524 -0.5516 -0.8149  1.1307]
 [-1.2593  0.8061  0.7738 -0.6441 -1.3384  1.2362  0.      0.    ]
 [ 0.6877  1.9626 -1.0171 -0.7908  0.      0.      0.      0.    ]
 [ 0.2111  1.687  -0.0555 -0.0242 -1.2556  1.1843 -0.509   1.5797]
 [-0.6607  0.      0.      0.      0.      0.      0.      0.    ]
 [-0.3114 -0.6608  0.      0.      0.      0.      0.      0.    ]
 [ 0.8224 -1.2478 -0.9483  0.6411 -0.9707  1.659  -0.642   0.    ]
 [ 1.7515  1.3955 -0.9958 -0.1844  0.5085 -0.1619  1.0888  1.7601]]

For a more realistic example, try wrapping preprocessing.image.ImageDataGenerator as a tf.data.Dataset.

First download the data:

flowers = tf.keras.utils.get_file(
    'flower_photos',
    'https://storage.googleapis.com/download.tensorflow.org/example_images/flower_photos.tgz',
    untar=True)
Downloading data from https://storage.googleapis.com/download.tensorflow.org/example_images/flower_photos.tgz
228818944/228813984 [==============================] - 7s 0us/step

Create the image.ImageDataGenerator

img_gen = tf.keras.preprocessing.image.ImageDataGenerator(rescale=1./255, rotation_range=20)
images, labels = next(img_gen.flow_from_directory(flowers))
Found 3670 images belonging to 5 classes.
print(images.dtype, images.shape)
print(labels.dtype, labels.shape)
float32 (32, 256, 256, 3)
float32 (32, 5)
ds = tf.data.Dataset.from_generator(
    img_gen.flow_from_directory, args=[flowers], 
    output_types=(tf.float32, tf.float32), 
    output_shapes=([32,256,256,3], [32,5])
)

ds
<FlatMapDataset shapes: ((32, 256, 256, 3), (32, 5)), types: (tf.float32, tf.float32)>

Consuming TFRecord data

See Loading TFRecords for an end-to-end example.

The tf.data API supports a variety of file formats so that you can process large datasets that do not fit in memory. For example, the TFRecord file format is a simple record-oriented binary format that many TensorFlow applications use for training data. The tf.data.TFRecordDataset class enables you to stream over the contents of one or more TFRecord files as part of an input pipeline.

Here is an example using the test file from the French Street Name Signs (FSNS).

# Creates a dataset that reads all of the examples from two files.
fsns_test_file = tf.keras.utils.get_file("fsns.tfrec", "https://storage.googleapis.com/download.tensorflow.org/data/fsns-20160927/testdata/fsns-00000-of-00001")
Downloading data from https://storage.googleapis.com/download.tensorflow.org/data/fsns-20160927/testdata/fsns-00000-of-00001
7905280/7904079 [==============================] - 1s 0us/step

The filenames argument to the TFRecordDataset initializer can either be a string, a list of strings, or a tf.Tensor of strings. Therefore if you have two sets of files for training and validation purposes, you can create a factory method that produces the dataset, taking filenames as an input argument:

dataset = tf.data.TFRecordDataset(filenames = [fsns_test_file])
dataset
<TFRecordDatasetV2 shapes: (), types: tf.string>

Many TensorFlow projects use serialized tf.train.Example records in their TFRecord files. These need to be decoded before they can be inspected:

raw_example = next(iter(dataset))
parsed = tf.train.Example.FromString(raw_example.numpy())

parsed.features.feature['image/text']
bytes_list {
  value: "Rue Perreyon"
}

Consuming text data

See Loading Text for an end to end example.

Many datasets are distributed as one or more text files. The tf.data.TextLineDataset provides an easy way to extract lines from one or more text files. Given one or more filenames, a TextLineDataset will produce one string-valued element per line of those files.

directory_url = 'https://storage.googleapis.com/download.tensorflow.org/data/illiad/'
file_names = ['cowper.txt', 'derby.txt', 'butler.txt']

file_paths = [
    tf.keras.utils.get_file(file_name, directory_url + file_name)
    for file_name in file_names
]
Downloading data from https://storage.googleapis.com/download.tensorflow.org/data/illiad/cowper.txt
819200/815980 [==============================] - 0s 0us/step
Downloading data from https://storage.googleapis.com/download.tensorflow.org/data/illiad/derby.txt
811008/809730 [==============================] - 0s 0us/step
Downloading data from https://storage.googleapis.com/download.tensorflow.org/data/illiad/butler.txt
811008/807992 [==============================] - 0s 0us/step
dataset = tf.data.TextLineDataset(file_paths)

Here are the first few lines of the first file:

for line in dataset.take(5):
  print(line.numpy())
b"\xef\xbb\xbfAchilles sing, O Goddess! Peleus' son;"
b'His wrath pernicious, who ten thousand woes'
b"Caused to Achaia's host, sent many a soul"
b'Illustrious into Ades premature,'
b'And Heroes gave (so stood the will of Jove)'

To alternate lines between files use Dataset.interleave. This makes it easier to shuffle files together. Here are the first, second and third lines from each translation:

files_ds = tf.data.Dataset.from_tensor_slices(file_paths)
lines_ds = files_ds.interleave(tf.data.TextLineDataset, cycle_length=3)

for i, line in enumerate(lines_ds.take(9)):
  if i % 3 == 0:
    print()
  print(line.numpy())

b"\xef\xbb\xbfAchilles sing, O Goddess! Peleus' son;"
b"\xef\xbb\xbfOf Peleus' son, Achilles, sing, O Muse,"
b'\xef\xbb\xbfSing, O goddess, the anger of Achilles son of Peleus, that brought'

b'His wrath pernicious, who ten thousand woes'
b'The vengeance, deep and deadly; whence to Greece'
b'countless ills upon the Achaeans. Many a brave soul did it send'

b"Caused to Achaia's host, sent many a soul"
b'Unnumbered ills arose; which many a soul'
b'hurrying down to Hades, and many a hero did it yield a prey to dogs and'

By default, a TextLineDataset yields every line of each file, which may not be desirable, for example, if the file starts with a header line, or contains comments. These lines can be removed using the Dataset.skip() or Dataset.filter() transformations. Here, you skip the first line, then filter to find only survivors.

titanic_file = tf.keras.utils.get_file("train.csv", "https://storage.googleapis.com/tf-datasets/titanic/train.csv")
titanic_lines = tf.data.TextLineDataset(titanic_file)
Downloading data from https://storage.googleapis.com/tf-datasets/titanic/train.csv
32768/30874 [===============================] - 0s 0us/step
for line in titanic_lines.take(10):
  print(line.numpy())
b'survived,sex,age,n_siblings_spouses,parch,fare,class,deck,embark_town,alone'
b'0,male,22.0,1,0,7.25,Third,unknown,Southampton,n'
b'1,female,38.0,1,0,71.2833,First,C,Cherbourg,n'
b'1,female,26.0,0,0,7.925,Third,unknown,Southampton,y'
b'1,female,35.0,1,0,53.1,First,C,Southampton,n'
b'0,male,28.0,0,0,8.4583,Third,unknown,Queenstown,y'
b'0,male,2.0,3,1,21.075,Third,unknown,Southampton,n'
b'1,female,27.0,0,2,11.1333,Third,unknown,Southampton,n'
b'1,female,14.0,1,0,30.0708,Second,unknown,Cherbourg,n'
b'1,female,4.0,1,1,16.7,Third,G,Southampton,n'
def survived(line):
  return tf.not_equal(tf.strings.substr(line, 0, 1), "0")

survivors = titanic_lines.skip(1).filter(survived)
for line in survivors.take(10):
  print(line.numpy())
b'1,female,38.0,1,0,71.2833,First,C,Cherbourg,n'
b'1,female,26.0,0,0,7.925,Third,unknown,Southampton,y'
b'1,female,35.0,1,0,53.1,First,C,Southampton,n'
b'1,female,27.0,0,2,11.1333,Third,unknown,Southampton,n'
b'1,female,14.0,1,0,30.0708,Second,unknown,Cherbourg,n'
b'1,female,4.0,1,1,16.7,Third,G,Southampton,n'
b'1,male,28.0,0,0,13.0,Second,unknown,Southampton,y'
b'1,female,28.0,0,0,7.225,Third,unknown,Cherbourg,y'
b'1,male,28.0,0,0,35.5,First,A,Southampton,y'
b'1,female,38.0,1,5,31.3875,Third,unknown,Southampton,n'

Consuming CSV data

See Loading CSV Files, and Loading Pandas DataFrames for more examples.

The CSV file format is a popular format for storing tabular data in plain text.

For example:

titanic_file = tf.keras.utils.get_file("train.csv", "https://storage.googleapis.com/tf-datasets/titanic/train.csv")
df = pd.read_csv(titanic_file, index_col=None)
df.head()

If your data fits in memory the same Dataset.from_tensor_slices method works on dictionaries, allowing this data to be easily imported:

titanic_slices = tf.data.Dataset.from_tensor_slices(dict(df))

for feature_batch in titanic_slices.take(1):
  for key, value in feature_batch.items():
    print("  {!r:20s}: {}".format(key, value))
  'survived'          : 0
  'sex'               : b'male'
  'age'               : 22.0
  'n_siblings_spouses': 1
  'parch'             : 0
  'fare'              : 7.25
  'class'             : b'Third'
  'deck'              : b'unknown'
  'embark_town'       : b'Southampton'
  'alone'             : b'n'

A more scalable approach is to load from disk as necessary.

The tf.data module provides methods to extract records from one or more CSV files that comply with RFC 4180.

The experimental.make_csv_dataset function is the high level interface for reading sets of csv files. It supports column type inference and many other features, like batching and shuffling, to make usage simple.

titanic_batches = tf.data.experimental.make_csv_dataset(
    titanic_file, batch_size=4,
    label_name="survived")
for feature_batch, label_batch in titanic_batches.take(1):
  print("'survived': {}".format(label_batch))
  print("features:")
  for key, value in feature_batch.items():
    print("  {!r:20s}: {}".format(key, value))
'survived': [1 0 1 0]
features:
  'sex'               : [b'female' b'male' b'female' b'male']
  'age'               : [30. 28.  2. 28.]
  'n_siblings_spouses': [3 0 0 0]
  'parch'             : [0 0 1 0]
  'fare'              : [21.      7.7958 12.2875 26.55  ]
  'class'             : [b'Second' b'Third' b'Third' b'First']
  'deck'              : [b'unknown' b'unknown' b'unknown' b'C']
  'embark_town'       : [b'Southampton' b'Southampton' b'Southampton' b'Southampton']
  'alone'             : [b'n' b'y' b'n' b'y']

You can use the select_columns argument if you only need a subset of columns.

titanic_batches = tf.data.experimental.make_csv_dataset(
    titanic_file, batch_size=4,
    label_name="survived", select_columns=['class', 'fare', 'survived'])
for feature_batch, label_batch in titanic_batches.take(1):
  print("'survived': {}".format(label_batch))
  for key, value in feature_batch.items():
    print("  {!r:20s}: {}".format(key, value))
'survived': [0 0 0 0]
  'fare'              : [29.125   7.8958 77.2875  7.75  ]
  'class'             : [b'Third' b'Third' b'First' b'Third']

There is also a lower-level experimental.CsvDataset class which provides finer grained control. It does not support column type inference. Instead you must specify the type of each column.

titanic_types  = [tf.int32, tf.string, tf.float32, tf.int32, tf.int32, tf.float32, tf.string, tf.string, tf.string, tf.string] 
dataset = tf.data.experimental.CsvDataset(titanic_file, titanic_types , header=True)

for line in dataset.take(10):
  print([item.numpy() for item in line])
[0, b'male', 22.0, 1, 0, 7.25, b'Third', b'unknown', b'Southampton', b'n']
[1, b'female', 38.0, 1, 0, 71.2833, b'First', b'C', b'Cherbourg', b'n']
[1, b'female', 26.0, 0, 0, 7.925, b'Third', b'unknown', b'Southampton', b'y']
[1, b'female', 35.0, 1, 0, 53.1, b'First', b'C', b'Southampton', b'n']
[0, b'male', 28.0, 0, 0, 8.4583, b'Third', b'unknown', b'Queenstown', b'y']
[0, b'male', 2.0, 3, 1, 21.075, b'Third', b'unknown', b'Southampton', b'n']
[1, b'female', 27.0, 0, 2, 11.1333, b'Third', b'unknown', b'Southampton', b'n']
[1, b'female', 14.0, 1, 0, 30.0708, b'Second', b'unknown', b'Cherbourg', b'n']
[1, b'female', 4.0, 1, 1, 16.7, b'Third', b'G', b'Southampton', b'n']
[0, b'male', 20.0, 0, 0, 8.05, b'Third', b'unknown', b'Southampton', b'y']

If some columns are empty, this low-level interface allows you to provide default values instead of column types.

%%writefile missing.csv
1,2,3,4
,2,3,4
1,,3,4
1,2,,4
1,2,3,
,,,
Writing missing.csv
# Creates a dataset that reads all of the records from two CSV files, each with
# four float columns which may have missing values.

record_defaults = [999,999,999,999]
dataset = tf.data.experimental.CsvDataset("missing.csv", record_defaults)
dataset = dataset.map(lambda *items: tf.stack(items))
dataset
<MapDataset shapes: (4,), types: tf.int32>
for line in dataset:
  print(line.numpy())
[1 2 3 4]
[999   2   3   4]
[  1 999   3   4]
[  1   2 999   4]
[  1   2   3 999]
[999 999 999 999]

By default, a CsvDataset yields every column of every line of the file, which may not be desirable, for example if the file starts with a header line that should be ignored, or if some columns are not required in the input. These lines and fields can be removed with the header and select_cols arguments respectively.

# Creates a dataset that reads all of the records from two CSV files with
# headers, extracting float data from columns 2 and 4.
record_defaults = [999, 999] # Only provide defaults for the selected columns
dataset = tf.data.experimental.CsvDataset("missing.csv", record_defaults, select_cols=[1, 3])
dataset = dataset.map(lambda *items: tf.stack(items))
dataset
<MapDataset shapes: (2,), types: tf.int32>
for line in dataset:
  print(line.numpy())
[2 4]
[2 4]
[999   4]
[2 4]
[  2 999]
[999 999]

Consuming sets of files

There are many datasets distributed as a set of files, where each file is an example.

flowers_root = tf.keras.utils.get_file(
    'flower_photos',
    'https://storage.googleapis.com/download.tensorflow.org/example_images/flower_photos.tgz',
    untar=True)
flowers_root = pathlib.Path(flowers_root)

The root directory contains a directory for each class:

for item in flowers_root.glob("*"):
  print(item.name)
sunflowers
daisy
LICENSE.txt
roses
tulips
dandelion

The files in each class directory are examples:

list_ds = tf.data.Dataset.list_files(str(flowers_root/'*/*'))

for f in list_ds.take(5):
  print(f.numpy())
b'/home/kbuilder/.keras/datasets/flower_photos/roses/6409000675_6eb6806e59.jpg'
b'/home/kbuilder/.keras/datasets/flower_photos/tulips/4520577328_a94c11e806_n.jpg'
b'/home/kbuilder/.keras/datasets/flower_photos/sunflowers/4933229889_c5d9e36392.jpg'
b'/home/kbuilder/.keras/datasets/flower_photos/roses/22506717337_0fd63e53e9.jpg'
b'/home/kbuilder/.keras/datasets/flower_photos/daisy/20182559506_40a112f762.jpg'

Read the data using the tf.io.read_file function and extract the label from the path, returning (image, label) pairs:

def process_path(file_path):
  label = tf.strings.split(file_path, '/')[-2]
  return tf.io.read_file(file_path), label

labeled_ds = list_ds.map(process_path)
for image_raw, label_text in labeled_ds.take(1):
  print(repr(image_raw.numpy()[:100]))
  print()
  print(label_text.numpy())
b'\xff\xd8\xff\xe0\x00\x10JFIF\x00\x01\x01\x00\x00\x01\x00\x01\x00\x00\xff\xdb\x00C\x00\x03\x02\x02\x03\x02\x02\x03\x03\x03\x03\x04\x03\x03\x04\x05\x08\x05\x05\x04\x04\x05\n\x07\x07\x06\x08\x0c\n\x0c\x0c\x0b\n\x0b\x0b\r\x0e\x12\x10\r\x0e\x11\x0e\x0b\x0b\x10\x16\x10\x11\x13\x14\x15\x15\x15\x0c\x0f\x17\x18\x16\x14\x18\x12\x14\x15\x14\xff\xdb\x00C\x01\x03\x04\x04\x05\x04\x05'

b'sunflowers'

Batching dataset elements

Simple batching

The simplest form of batching stacks n consecutive elements of a dataset into a single element. The Dataset.batch() transformation does exactly this, with the same constraints as the tf.stack() operator, applied to each component of the elements: i.e. for each component i, all elements must have a tensor of the exact same shape.

inc_dataset = tf.data.Dataset.range(100)
dec_dataset = tf.data.Dataset.range(0, -100, -1)
dataset = tf.data.Dataset.zip((inc_dataset, dec_dataset))
batched_dataset = dataset.batch(4)

for batch in batched_dataset.take(4):
  print([arr.numpy() for arr in batch])
[array([0, 1, 2, 3]), array([ 0, -1, -2, -3])]
[array([4, 5, 6, 7]), array([-4, -5, -6, -7])]
[array([ 8,  9, 10, 11]), array([ -8,  -9, -10, -11])]
[array([12, 13, 14, 15]), array([-12, -13, -14, -15])]

While tf.data tries to propagate shape information, the default settings of Dataset.batch result in an unknown batch size because the last batch may not be full. Note the Nones in the shape:

batched_dataset
<BatchDataset shapes: ((None,), (None,)), types: (tf.int64, tf.int64)>

Use the drop_remainder argument to ignore that last batch, and get full shape propagation:

batched_dataset = dataset.batch(7, drop_remainder=True)
batched_dataset
<BatchDataset shapes: ((7,), (7,)), types: (tf.int64, tf.int64)>

Batching tensors with padding

The above recipe works for tensors that all have the same size. However, many models (e.g. sequence models) work with input data that can have varying size (e.g. sequences of different lengths). To handle this case, the Dataset.padded_batch transformation enables you to batch tensors of different shape by specifying one or more dimensions in which they may be padded.

dataset = tf.data.Dataset.range(100)
dataset = dataset.map(lambda x: tf.fill([tf.cast(x, tf.int32)], x))
dataset = dataset.padded_batch(4, padded_shapes=(None,))

for batch in dataset.take(2):
  print(batch.numpy())
  print()

[[0 0 0]
 [1 0 0]
 [2 2 0]
 [3 3 3]]

[[4 4 4 4 0 0 0]
 [5 5 5 5 5 0 0]
 [6 6 6 6 6 6 0]
 [7 7 7 7 7 7 7]]

The Dataset.padded_batch transformation allows you to set different padding for each dimension of each component, and it may be variable-length (signified by None in the example above) or constant-length. It is also possible to override the padding value, which defaults to 0.

Training workflows

Processing multiple epochs

The tf.data API offers two main ways to process multiple epochs of the same data.

The simplest way to iterate over a dataset in multiple epochs is to use the Dataset.repeat() transformation. First, create a dataset of titanic data:

titanic_file = tf.keras.utils.get_file("train.csv", "https://storage.googleapis.com/tf-datasets/titanic/train.csv")
titanic_lines = tf.data.TextLineDataset(titanic_file)
def plot_batch_sizes(ds):
  batch_sizes = [batch.shape[0] for batch in ds]
  plt.bar(range(len(batch_sizes)), batch_sizes)
  plt.xlabel('Batch number')
  plt.ylabel('Batch size')

Applying the Dataset.repeat() transformation with no arguments will repeat the input indefinitely.

The Dataset.repeat transformation concatenates its arguments without signaling the end of one epoch and the beginning of the next epoch. Because of this a Dataset.batch applied after Dataset.repeat will yield batches that straddle epoch boundaries:

titanic_batches = titanic_lines.repeat(3).batch(128)
plot_batch_sizes(titanic_batches)

png

If you need clear epoch separation, put Dataset.batch before the repeat:

titanic_batches = titanic_lines.batch(128).repeat(3)

plot_batch_sizes(titanic_batches)

png

If you would like to perform a custom computation (e.g. to collect statistics) at the end of each epoch then it's simplest to restart the dataset iteration on each epoch:

epochs = 3
dataset = titanic_lines.batch(128)

for epoch in range(epochs):
  for batch in dataset:
    print(batch.shape)
  print("End of epoch: ", epoch)
(128,)
(128,)
(128,)
(128,)
(116,)
End of epoch:  0
(128,)
(128,)
(128,)
(128,)
(116,)
End of epoch:  1
(128,)
(128,)
(128,)
(128,)
(116,)
End of epoch:  2

Randomly shuffling input data

The Dataset.shuffle() transformation maintains a fixed-size buffer and chooses the next element uniformly at random from that buffer.

Add an index to the dataset so you can see the effect:

lines = tf.data.TextLineDataset(titanic_file)
counter = tf.data.experimental.Counter()

dataset = tf.data.Dataset.zip((counter, lines))
dataset = dataset.shuffle(buffer_size=100)
dataset = dataset.batch(20)
dataset
<BatchDataset shapes: ((None,), (None,)), types: (tf.int64, tf.string)>

Since the buffer_size is 100, and the batch size is 20, the first batch contains no elements with an index over 120.

n,line_batch = next(iter(dataset))
print(n.numpy())
[ 73  71  16  28   6  65  91  12  42  68  54  40  81  46   4  98 105  89
  67  11]

As with Dataset.batch the order relative to Dataset.repeat matters.

Dataset.shuffle doesn't signal the end of an epoch until the shuffle buffer is empty. So a shuffle placed before a repeat will show every element of one epoch before moving to the next:

dataset = tf.data.Dataset.zip((counter, lines))
shuffled = dataset.shuffle(buffer_size=100).batch(10).repeat(2)

print("Here are the item ID's near the epoch boundary:\n")
for n, line_batch in shuffled.skip(60).take(5):
  print(n.numpy())
Here are the item ID's near the epoch boundary:

[541 569 508 599 578 418 559 595 401 594]
[282 522 395 552 362 442 389 619 506 523]
[612 585 482 518 604 617 608 622]
[85 27 73 57 16 47 43 50 55 64]
[ 90  89  24  59   9 101  97  65  14  99]
shuffle_repeat = [n.numpy().mean() for n, line_batch in shuffled]
plt.plot(shuffle_repeat, label="shuffle().repeat()")
plt.ylabel("Mean item ID")
plt.legend()
<matplotlib.legend.Legend at 0x7feeb44cc748>

png

But a repeat before a shuffle mixes the epoch boundaries together:

dataset = tf.data.Dataset.zip((counter, lines))
shuffled = dataset.repeat(2).shuffle(buffer_size=100).batch(10)

print("Here are the item ID's near the epoch boundary:\n")
for n, line_batch in shuffled.skip(55).take(15):
  print(n.numpy())
Here are the item ID's near the epoch boundary:

[137   2 621 472 409  22 575 344 595  16]
[ 18 545 619 579 539 610 611 479 450 586]
[  1  19 613 612  31  40  14  15 451  48]
[465 419 464 497 463  23 510 521 614  37]
[554  33 552  20 292 527 622  53  69 587]
[338   3 617 561  72 470 566  66   7 577]
[624  79  62  49   6  57 599 590  86  42]
[ 35 514  63  91  43 529  45 574 588 473]
[ 90  65  96  34  26 584  59 484 518  12]
[568 111 602  92 100 115   5 526  28 620]
[582 548  54 123  60  74  17  56 600 121]
[ 88  94  82  10 101  77  58  50 603  98]
[ 67 142 107 572 137 625 437  41  47 122]
[ 73 303 565 141 113 127 124 158 606 131]
[ 95 134  61 425 117 154  85  13  81  51]
repeat_shuffle = [n.numpy().mean() for n, line_batch in shuffled]

plt.plot(shuffle_repeat, label="shuffle().repeat()")
plt.plot(repeat_shuffle, label="repeat().shuffle()")
plt.ylabel("Mean item ID")
plt.legend()
<matplotlib.legend.Legend at 0x7feeb4236be0>

png

Preprocessing data

The Dataset.map(f) transformation produces a new dataset by applying a given function f to each element of the input dataset. It is based on the map() function that is commonly applied to lists (and other structures) in functional programming languages. The function f takes the tf.Tensor objects that represent a single element in the input, and returns the tf.Tensor objects that will represent a single element in the new dataset. Its implementation uses standard TensorFlow operations to transform one element into another.

This section covers common examples of how to use Dataset.map().

Decoding image data and resizing it

When training a neural network on real-world image data, it is often necessary to convert images of different sizes to a common size, so that they may be batched into a fixed size.

Rebuild the flower filenames dataset:

list_ds = tf.data.Dataset.list_files(str(flowers_root/'*/*'))

Write a function that manipulates the dataset elements.

# Reads an image from a file, decodes it into a dense tensor, and resizes it
# to a fixed shape.
def parse_image(filename):
  parts = tf.strings.split(filename, '/')
  label = parts[-2]

  image = tf.io.read_file(filename)
  image = tf.image.decode_jpeg(image)
  image = tf.image.convert_image_dtype(image, tf.float32)
  image = tf.image.resize(image, [128, 128])
  return image, label

Test that it works.

file_path = next(iter(list_ds))
image, label = parse_image(file_path)

def show(image, label):
  plt.figure()
  plt.imshow(image)
  plt.title(label.numpy().decode('utf-8'))
  plt.axis('off')

show(image, label)

png

Map it over the dataset.

images_ds = list_ds.map(parse_image)

for image, label in images_ds.take(2):
  show(image, label)

png

png

Applying arbitrary Python logic

For performance reasons, use TensorFlow operations for preprocessing your data whenever possible. However, it is sometimes useful to call external Python libraries when parsing your input data. You can use the tf.py_function() operation in a Dataset.map() transformation.

For example, if you want to apply a random rotation, the tf.image module only has tf.image.rot90, which is not very useful for image augmentation.

To demonstrate tf.py_function, try using the scipy.ndimage.rotate function instead:

import scipy.ndimage as ndimage

def random_rotate_image(image):
  image = ndimage.rotate(image, np.random.uniform(-30, 30), reshape=False)
  return image
image, label = next(iter(images_ds))
image = random_rotate_image(image)
show(image, label)
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers).

png

To use this function with Dataset.map the same caveats apply as with Dataset.from_generator, you need to describe the return shapes and types when you apply the function:

def tf_random_rotate_image(image, label):
  im_shape = image.shape
  [image,] = tf.py_function(random_rotate_image, [image], [tf.float32])
  image.set_shape(im_shape)
  return image, label
rot_ds = images_ds.map(tf_random_rotate_image)

for image, label in rot_ds.take(2):
  show(image, label)
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers).
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers).

png

png

Parsing tf.Example protocol buffer messages

Many input pipelines extract tf.train.Example protocol buffer messages from a TFRecord format. Each tf.train.Example record contains one or more "features", and the input pipeline typically converts these features into tensors.

fsns_test_file = tf.keras.utils.get_file("fsns.tfrec", "https://storage.googleapis.com/download.tensorflow.org/data/fsns-20160927/testdata/fsns-00000-of-00001")
dataset = tf.data.TFRecordDataset(filenames = [fsns_test_file])
dataset
<TFRecordDatasetV2 shapes: (), types: tf.string>

You can work with tf.train.Example protos outside of a tf.data.Dataset to understand the data:

raw_example = next(iter(dataset))
parsed = tf.train.Example.FromString(raw_example.numpy())

feature = parsed.features.feature
raw_img = feature['image/encoded'].bytes_list.value[0]
img = tf.image.decode_png(raw_img)
plt.imshow(img)
plt.axis('off')
_ = plt.title(feature["image/text"].bytes_list.value[0])

png

raw_example = next(iter(dataset))
def tf_parse(eg):
  example = tf.io.parse_example(
      eg[tf.newaxis], {
          'image/encoded': tf.io.FixedLenFeature(shape=(), dtype=tf.string),
          'image/text': tf.io.FixedLenFeature(shape=(), dtype=tf.string)
      })
  return example['image/encoded'][0], example['image/text'][0]
img, txt = tf_parse(raw_example)
print(txt.numpy())
print(repr(img.numpy()[:20]), "...")
b'Rue Perreyon'
b'\x89PNG\r\n\x1a\n\x00\x00\x00\rIHDR\x00\x00\x02X' ...
decoded = dataset.map(tf_parse)
decoded
<MapDataset shapes: ((), ()), types: (tf.string, tf.string)>
image_batch, text_batch = next(iter(decoded.batch(10)))
image_batch.shape
TensorShape([10])

Time series windowing

For an end to end time series example see: Time series forecasting.

Time series data is often organized with the time axis intact.

Use a simple Dataset.range to demonstrate:

range_ds = tf.data.Dataset.range(100000)

Typically, models based on this sort of data will want a contiguous time slice.

The simplest approach would be to batch the data:

Using batch

batches = range_ds.batch(10, drop_remainder=True)

for batch in batches.take(5):
  print(batch.numpy())
[0 1 2 3 4 5 6 7 8 9]
[10 11 12 13 14 15 16 17 18 19]
[20 21 22 23 24 25 26 27 28 29]
[30 31 32 33 34 35 36 37 38 39]
[40 41 42 43 44 45 46 47 48 49]

Or to make dense predictions one step into the future, you might shift the features and labels by one step relative to each other:

def dense_1_step(batch):
  # Shift features and labels one step relative to each other.
  return batch[:-1], batch[1:]

predict_dense_1_step = batches.map(dense_1_step)

for features, label in predict_dense_1_step.take(3):
  print(features.numpy(), " => ", label.numpy())
[0 1 2 3 4 5 6 7 8]  =>  [1 2 3 4 5 6 7 8 9]
[10 11 12 13 14 15 16 17 18]  =>  [11 12 13 14 15 16 17 18 19]
[20 21 22 23 24 25 26 27 28]  =>  [21 22 23 24 25 26 27 28 29]

To predict a whole window instead of a fixed offset you can split the batches into two parts:

batches = range_ds.batch(15, drop_remainder=True)

def label_next_5_steps(batch):
  return (batch[:-5],   # Take the first 5 steps
          batch[-5:])   # take the remainder

predict_5_steps = batches.map(label_next_5_steps)

for features, label in predict_5_steps.take(3):
  print(features.numpy(), " => ", label.numpy())
[0 1 2 3 4 5 6 7 8 9]  =>  [10 11 12 13 14]
[15 16 17 18 19 20 21 22 23 24]  =>  [25 26 27 28 29]
[30 31 32 33 34 35 36 37 38 39]  =>  [40 41 42 43 44]

To allow some overlap between the features of one batch and the labels of another, use Dataset.zip:

feature_length = 10
label_length = 5

features = range_ds.batch(feature_length, drop_remainder=True)
labels = range_ds.batch(feature_length).skip(1).map(lambda labels: labels[:-5])

predict_5_steps = tf.data.Dataset.zip((features, labels))

for features, label in predict_5_steps.take(3):
  print(features.numpy(), " => ", label.numpy())
[0 1 2 3 4 5 6 7 8 9]  =>  [10 11 12 13 14]
[10 11 12 13 14 15 16 17 18 19]  =>  [20 21 22 23 24]
[20 21 22 23 24 25 26 27 28 29]  =>  [30 31 32 33 34]

Using window

While using Dataset.batch works, there are situations where you may need finer control. The Dataset.window method gives you complete control, but requires some care: it returns a Dataset of Datasets. See Dataset structure for details.

window_size = 5

windows = range_ds.window(window_size, shift=1)
for sub_ds in windows.take(5):
  print(sub_ds)
<_VariantDataset shapes: (), types: tf.int64>
<_VariantDataset shapes: (), types: tf.int64>
<_VariantDataset shapes: (), types: tf.int64>
<_VariantDataset shapes: (), types: tf.int64>
<_VariantDataset shapes: (), types: tf.int64>

The Dataset.flat_map method can take a dataset of datasets and flatten it into a single dataset:

 for x in windows.flat_map(lambda x: x).take(30):
   print(x.numpy(), end=' ')
WARNING:tensorflow:AutoGraph could not transform <function <lambda> at 0x7feeb46c06a8> and will run it as-is.
Cause: could not parse the source code:

for x in windows.flat_map(lambda x: x).take(30):

This error may be avoided by creating the lambda in a standalone statement.

To silence this warning, decorate the function with @tf.autograph.experimental.do_not_convert
WARNING: AutoGraph could not transform <function <lambda> at 0x7feeb46c06a8> and will run it as-is.
Cause: could not parse the source code:

for x in windows.flat_map(lambda x: x).take(30):

This error may be avoided by creating the lambda in a standalone statement.

To silence this warning, decorate the function with @tf.autograph.experimental.do_not_convert
0 1 2 3 4 1 2 3 4 5 2 3 4 5 6 3 4 5 6 7 4 5 6 7 8 5 6 7 8 9 

In nearly all cases, you will want to .batch the dataset first:

def sub_to_batch(sub):
  return sub.batch(window_size, drop_remainder=True)

for example in windows.flat_map(sub_to_batch).take(5):
  print(example.numpy())
[0 1 2 3 4]
[1 2 3 4 5]
[2 3 4 5 6]
[3 4 5 6 7]
[4 5 6 7 8]

Now, you can see that the shift argument controls how much each window moves over.

Putting this together you might write this function:

def make_window_dataset(ds, window_size=5, shift=1, stride=1):
  windows = ds.window(window_size, shift=shift, stride=stride)

  def sub_to_batch(sub):
    return sub.batch(window_size, drop_remainder=True)

  windows = windows.flat_map(sub_to_batch)
  return windows

ds = make_window_dataset(range_ds, window_size=10, shift = 5, stride=3)

for example in ds.take(10):
  print(example.numpy())
[ 0  3  6  9 12 15 18 21 24 27]
[ 5  8 11 14 17 20 23 26 29 32]
[10 13 16 19 22 25 28 31 34 37]
[15 18 21 24 27 30 33 36 39 42]
[20 23 26 29 32 35 38 41 44 47]
[25 28 31 34 37 40 43 46 49 52]
[30 33 36 39 42 45 48 51 54 57]
[35 38 41 44 47 50 53 56 59 62]
[40 43 46 49 52 55 58 61 64 67]
[45 48 51 54 57 60 63 66 69 72]

Then it's easy to extract labels, as before:

dense_labels_ds = ds.map(dense_1_step)

for inputs,labels in dense_labels_ds.take(3):
  print(inputs.numpy(), "=>", labels.numpy())
[ 0  3  6  9 12 15 18 21 24] => [ 3  6  9 12 15 18 21 24 27]
[ 5  8 11 14 17 20 23 26 29] => [ 8 11 14 17 20 23 26 29 32]
[10 13 16 19 22 25 28 31 34] => [13 16 19 22 25 28 31 34 37]

Resampling

When working with a dataset that is very class-imbalanced, you may want to resample the dataset. tf.data provides two methods to do this. The credit card fraud dataset is a good example of this sort of problem.

zip_path = tf.keras.utils.get_file(
    origin='https://storage.googleapis.com/download.tensorflow.org/data/creditcard.zip',
    fname='creditcard.zip',
    extract=True)

csv_path = zip_path.replace('.zip', '.csv')
Downloading data from https://storage.googleapis.com/download.tensorflow.org/data/creditcard.zip
69156864/69155632 [==============================] - 3s 0us/step
creditcard_ds = tf.data.experimental.make_csv_dataset(
    csv_path, batch_size=1024, label_name="Class",
    # Set the column types: 30 floats and an int.
    column_defaults=[float()]*30+[int()])

Now, check the distribution of classes, it is highly skewed:

def count(counts, batch):
  features, labels = batch
  class_1 = labels == 1
  class_1 = tf.cast(class_1, tf.int32)

  class_0 = labels == 0
  class_0 = tf.cast(class_0, tf.int32)

  counts['class_0'] += tf.reduce_sum(class_0)
  counts['class_1'] += tf.reduce_sum(class_1)

  return counts
counts = creditcard_ds.take(10).reduce(
    initial_state={'class_0': 0, 'class_1': 0},
    reduce_func = count)

counts = np.array([counts['class_0'].numpy(),
                   counts['class_1'].numpy()]).astype(np.float32)

fractions = counts/counts.sum()
print(fractions)
[0.9954 0.0046]

A common approach to training with an imbalanced dataset is to balance it. tf.data includes a few methods which enable this workflow:

Datasets sampling

One approach to resampling a dataset is to use sample_from_datasets. This is more applicable when you have a separate data.Dataset for each class.

Here, just use filter to generate them from the credit card fraud data:

negative_ds = (
  creditcard_ds
    .unbatch()
    .filter(lambda features, label: label==0)
    .repeat())
positive_ds = (
  creditcard_ds
    .unbatch()
    .filter(lambda features, label: label==1)
    .repeat())
WARNING:tensorflow:AutoGraph could not transform <function <lambda> at 0x7feeb41a8510> and will run it as-is.
Cause: could not parse the source code:

    .filter(lambda features, label: label==0)

This error may be avoided by creating the lambda in a standalone statement.

To silence this warning, decorate the function with @tf.autograph.experimental.do_not_convert
WARNING: AutoGraph could not transform <function <lambda> at 0x7feeb41a8510> and will run it as-is.
Cause: could not parse the source code:

    .filter(lambda features, label: label==0)

This error may be avoided by creating the lambda in a standalone statement.

To silence this warning, decorate the function with @tf.autograph.experimental.do_not_convert
WARNING:tensorflow:AutoGraph could not transform <function <lambda> at 0x7feeb41a8e18> and will run it as-is.
Cause: could not parse the source code:

    .filter(lambda features, label: label==1)

This error may be avoided by creating the lambda in a standalone statement.

To silence this warning, decorate the function with @tf.autograph.experimental.do_not_convert
WARNING: AutoGraph could not transform <function <lambda> at 0x7feeb41a8e18> and will run it as-is.
Cause: could not parse the source code:

    .filter(lambda features, label: label==1)

This error may be avoided by creating the lambda in a standalone statement.

To silence this warning, decorate the function with @tf.autograph.experimental.do_not_convert
for features, label in positive_ds.batch(10).take(1):
  print(label.numpy())
[1 1 1 1 1 1 1 1 1 1]

To use tf.data.experimental.sample_from_datasets pass the datasets, and the weight for each:

balanced_ds = tf.data.experimental.sample_from_datasets(
    [negative_ds, positive_ds], [0.5, 0.5]).batch(10)

Now the dataset produces examples of each class with 50/50 probability:

for features, labels in balanced_ds.take(10):
  print(labels.numpy())
[0 0 1 1 0 0 1 1 1 1]
[0 0 0 0 1 1 1 1 0 0]
[0 0 0 0 0 0 1 0 1 1]
[1 0 1 1 0 0 0 0 1 0]
[0 1 0 1 0 1 1 0 1 0]
[1 0 0 1 0 1 1 0 1 0]
[0 1 1 1 0 0 1 0 1 1]
[1 0 0 1 0 0 1 0 0 0]
[1 0 0 1 0 0 0 1 0 1]
[1 1 0 1 1 0 1 1 1 0]

Rejection resampling

One problem with the above experimental.sample_from_datasets approach is that it needs a separate tf.data.Dataset per class. Using Dataset.filter works, but results in all the data being loaded twice.

The data.experimental.rejection_resample function can be applied to a dataset to rebalance it, while only loading it once. Elements will be dropped from the dataset to achieve balance.

data.experimental.rejection_resample takes a class_func argument. This class_func is applied to each dataset element, and is used to determine which class an example belongs to for the purposes of balancing.

The elements of creditcard_ds are already (features, label) pairs. So the class_func just needs to return those labels:

def class_func(features, label):
  return label

The resampler also needs a target distribution, and optionally an initial distribution estimate:

resampler = tf.data.experimental.rejection_resample(
    class_func, target_dist=[0.5, 0.5], initial_dist=fractions)

The resampler deals with individual examples, so you must unbatch the dataset before applying the resampler:

resample_ds = creditcard_ds.unbatch().apply(resampler).batch(10)
WARNING:tensorflow:From /tmpfs/src/tf_docs_env/lib/python3.6/site-packages/tensorflow/python/data/experimental/ops/resampling.py:156: Print (from tensorflow.python.ops.logging_ops) is deprecated and will be removed after 2018-08-20.
Instructions for updating:
Use tf.print instead of tf.Print. Note that tf.print returns a no-output operator that directly prints the output. Outside of defuns or eager mode, this operator will not be executed unless it is directly specified in session.run or used as a control dependency for other operators. This is only a concern in graph mode. Below is an example of how to ensure tf.print executes in graph mode:

The resampler returns creates (class, example) pairs from the output of the class_func. In this case, the example was already a (feature, label) pair, so use map to drop the extra copy of the labels:

balanced_ds = resample_ds.map(lambda extra_label, features_and_label: features_and_label)

Now the dataset produces examples of each class with 50/50 probability:

for features, labels in balanced_ds.take(10):
  print(labels.numpy())
[0 1 0 1 0 1 0 0 0 0]
[1 0 1 1 1 1 0 0 1 1]
[0 1 1 1 0 0 1 1 1 0]
[1 1 0 1 0 0 0 1 0 0]
[0 0 0 0 1 1 0 0 1 1]
[0 1 1 0 0 1 0 1 0 1]
[1 1 1 0 0 0 1 0 1 0]
[1 0 1 1 1 1 1 1 1 0]
[1 1 1 1 0 1 0 1 0 1]
[1 0 0 0 0 0 1 1 0 1]

Using high-level APIs

tf.keras

The tf.keras API simplifies many aspects of creating and executing machine learning models. Its .fit() and .evaluate() and .predict() APIs support datasets as inputs. Here is a quick dataset and model setup:

train, test = tf.keras.datasets.fashion_mnist.load_data()

images, labels = train
images = images/255.0
labels = labels.astype(np.int32)
fmnist_train_ds = tf.data.Dataset.from_tensor_slices((images, labels))
fmnist_train_ds = fmnist_train_ds.shuffle(5000).batch(32)

model = tf.keras.Sequential([
  tf.keras.layers.Flatten(),
  tf.keras.layers.Dense(10)
])

model.compile(optimizer='adam',
              loss=tf.keras.losses.SparseCategoricalCrossentropy(from_logits=True), 
              metrics=['accuracy'])

Passing a dataset of (feature, label) pairs is all that's needed for Model.fit and Model.evaluate:

model.fit(fmnist_train_ds, epochs=2)
Train for 1875 steps
Epoch 1/2
1875/1875 [==============================] - 4s 2ms/step - loss: 0.6066 - accuracy: 0.7949
Epoch 2/2
1875/1875 [==============================] - 4s 2ms/step - loss: 0.4627 - accuracy: 0.8417

<tensorflow.python.keras.callbacks.History at 0x7feeac4f45f8>

If you pass an infinite dataset, for example by calling Dataset.repeat(), you just need to also pass the steps_per_epoch argument:

model.fit(fmnist_train_ds.repeat(), epochs=2, steps_per_epoch=20)
Train for 20 steps
Epoch 1/2
20/20 [==============================] - 0s 14ms/step - loss: 0.4443 - accuracy: 0.8531
Epoch 2/2
20/20 [==============================] - 0s 2ms/step - loss: 0.4467 - accuracy: 0.8422

<tensorflow.python.keras.callbacks.History at 0x7feeb4454198>

For evaluation you can pass the number of evaluation steps:

loss, accuracy = model.evaluate(fmnist_train_ds)
print("Loss :", loss)
print("Accuracy :", accuracy)
1875/1875 [==============================] - 3s 2ms/step - loss: 0.4412 - accuracy: 0.8485
Loss : 0.4411765540321668
Accuracy : 0.84845

For long datasets, set the number of steps to evaluate:

loss, accuracy = model.evaluate(fmnist_train_ds.repeat(), steps=10)
print("Loss :", loss)
print("Accuracy :", accuracy)
10/10 [==============================] - 0s 3ms/step - loss: 0.4964 - accuracy: 0.8156
Loss : 0.4964326351881027
Accuracy : 0.815625

The labels are not required in when calling Model.predict.

predict_ds = tf.data.Dataset.from_tensor_slices(images).batch(32)
result = model.predict(predict_ds, steps = 10)
print(result.shape)
(320, 10)

But the labels are ignored if you do pass a dataset containing them:

result = model.predict(fmnist_train_ds, steps = 10)
print(result.shape)
(320, 10)

tf.estimator

To use a Dataset in the input_fn of a tf.estimator.Estimator, simply return the Dataset from the input_fn and the framework will take care of consuming its elements for you. For example:

import tensorflow_datasets as tfds

def train_input_fn():
  titanic = tf.data.experimental.make_csv_dataset(
      titanic_file, batch_size=32,
      label_name="survived")
  titanic_batches = (
      titanic.cache().repeat().shuffle(500)
      .prefetch(tf.data.experimental.AUTOTUNE))
  return titanic_batches
embark = tf.feature_column.categorical_column_with_hash_bucket('embark_town', 32)
cls = tf.feature_column.categorical_column_with_vocabulary_list('class', ['First', 'Second', 'Third']) 
age = tf.feature_column.numeric_column('age')
import tempfile
model_dir = tempfile.mkdtemp()
model = tf.estimator.LinearClassifier(
    model_dir=model_dir,
    feature_columns=[embark, cls, age],
    n_classes=2
)
INFO:tensorflow:Using default config.
INFO:tensorflow:Using config: {'_model_dir': '/tmp/tmpus4g1el1', '_tf_random_seed': None, '_save_summary_steps': 100, '_save_checkpoints_steps': None, '_save_checkpoints_secs': 600, '_session_config': allow_soft_placement: true
graph_options {
  rewrite_options {
    meta_optimizer_iterations: ONE
  }
}
, '_keep_checkpoint_max': 5, '_keep_checkpoint_every_n_hours': 10000, '_log_step_count_steps': 100, '_train_distribute': None, '_device_fn': None, '_protocol': None, '_eval_distribute': None, '_experimental_distribute': None, '_experimental_max_worker_delay_secs': None, '_session_creation_timeout_secs': 7200, '_service': None, '_cluster_spec': ClusterSpec({}), '_task_type': 'worker', '_task_id': 0, '_global_id_in_cluster': 0, '_master': '', '_evaluation_master': '', '_is_chief': True, '_num_ps_replicas': 0, '_num_worker_replicas': 1}
model = model.train(input_fn=train_input_fn, steps=100)
WARNING:tensorflow:From /tmpfs/src/tf_docs_env/lib/python3.6/site-packages/tensorflow/python/ops/resource_variable_ops.py:1658: calling BaseResourceVariable.__init__ (from tensorflow.python.ops.resource_variable_ops) with constraint is deprecated and will be removed in a future version.
Instructions for updating:
If using Keras pass *_constraint arguments to layers.
WARNING:tensorflow:From /tmpfs/src/tf_docs_env/lib/python3.6/site-packages/tensorflow/python/training/training_util.py:236: Variable.initialized_value (from tensorflow.python.ops.variables) is deprecated and will be removed in a future version.
Instructions for updating:
Use Variable.read_value. Variables in 2.X are initialized automatically both in eager and graph (inside tf.defun) contexts.
INFO:tensorflow:Calling model_fn.
WARNING:tensorflow:From /tmpfs/src/tf_docs_env/lib/python3.6/site-packages/tensorflow/python/feature_column/feature_column_v2.py:540: Layer.add_variable (from tensorflow.python.keras.engine.base_layer_v1) is deprecated and will be removed in a future version.
Instructions for updating:
Please use `layer.add_weight` method instead.
WARNING:tensorflow:From /tmpfs/src/tf_docs_env/lib/python3.6/site-packages/tensorflow/python/keras/optimizer_v2/ftrl.py:144: calling Constant.__init__ (from tensorflow.python.ops.init_ops) with dtype is deprecated and will be removed in a future version.
Instructions for updating:
Call initializer instance with the dtype argument instead of passing it to the constructor
INFO:tensorflow:Done calling model_fn.
INFO:tensorflow:Create CheckpointSaverHook.
INFO:tensorflow:Graph was finalized.
INFO:tensorflow:Running local_init_op.
INFO:tensorflow:Done running local_init_op.
INFO:tensorflow:Calling checkpoint listeners before saving checkpoint 0...
INFO:tensorflow:Saving checkpoints for 0 into /tmp/tmpus4g1el1/model.ckpt.
INFO:tensorflow:Calling checkpoint listeners after saving checkpoint 0...
INFO:tensorflow:loss = 0.6931472, step = 0
INFO:tensorflow:Calling checkpoint listeners before saving checkpoint 100...
INFO:tensorflow:Saving checkpoints for 100 into /tmp/tmpus4g1el1/model.ckpt.
INFO:tensorflow:Calling checkpoint listeners after saving checkpoint 100...
INFO:tensorflow:Loss for final step: 0.6380516.
result = model.evaluate(train_input_fn, steps=10)

for key, value in result.items():
  print(key, ":", value)
INFO:tensorflow:Calling model_fn.
INFO:tensorflow:Done calling model_fn.
INFO:tensorflow:Starting evaluation at 2020-02-21T02:30:20Z
INFO:tensorflow:Graph was finalized.
INFO:tensorflow:Restoring parameters from /tmp/tmpus4g1el1/model.ckpt-100
INFO:tensorflow:Running local_init_op.
INFO:tensorflow:Done running local_init_op.
INFO:tensorflow:Evaluation [1/10]
INFO:tensorflow:Evaluation [2/10]
INFO:tensorflow:Evaluation [3/10]
INFO:tensorflow:Evaluation [4/10]
INFO:tensorflow:Evaluation [5/10]
INFO:tensorflow:Evaluation [6/10]
INFO:tensorflow:Evaluation [7/10]
INFO:tensorflow:Evaluation [8/10]
INFO:tensorflow:Evaluation [9/10]
INFO:tensorflow:Evaluation [10/10]
INFO:tensorflow:Inference Time : 0.71842s
INFO:tensorflow:Finished evaluation at 2020-02-21-02:30:21
INFO:tensorflow:Saving dict for global step 100: accuracy = 0.665625, accuracy_baseline = 0.60625, auc = 0.6889626, auc_precision_recall = 0.5384178, average_loss = 0.6210966, global_step = 100, label/mean = 0.39375, loss = 0.6210966, precision = 0.6091954, prediction/mean = 0.4021482, recall = 0.42063493
INFO:tensorflow:Saving 'checkpoint_path' summary for global step 100: /tmp/tmpus4g1el1/model.ckpt-100
accuracy : 0.665625
accuracy_baseline : 0.60625
auc : 0.6889626
auc_precision_recall : 0.5384178
average_loss : 0.6210966
label/mean : 0.39375
loss : 0.6210966
precision : 0.6091954
prediction/mean : 0.4021482
recall : 0.42063493
global_step : 100
for pred in model.predict(train_input_fn):
  for key, value in pred.items():
    print(key, ":", value)
  break
INFO:tensorflow:Calling model_fn.
INFO:tensorflow:Done calling model_fn.
INFO:tensorflow:Graph was finalized.
INFO:tensorflow:Restoring parameters from /tmp/tmpus4g1el1/model.ckpt-100
INFO:tensorflow:Running local_init_op.
INFO:tensorflow:Done running local_init_op.
logits : [-0.4382]
logistic : [0.3922]
probabilities : [0.6078 0.3922]
class_ids : [0]
classes : [b'0']
all_class_ids : [0 1]
all_classes : [b'0' b'1']